Table 3. Binding affinity score dominant compounds in M1 - cytochrome c peroxidase.
Ligand |
Binding Affinity (kcal/mol) |
Receptor Interaction |
Distance (A) |
Ascorbic Acid |
-6.6 |
SER A:248/Hydrogen |
4.29 |
SER A:80/Hydrogen |
4.37 |
||
ASP A:62/Hydrogen |
4.41 |
||
THR A:82/Hydrogen |
3.66 |
||
|
ASN A:79/Donor Clash |
4.88 |
|
Levoglucosan |
THR A:82/Hydrogen |
3.85 |
|
-6.2 |
SER A:80/Hydrogen |
4.21 |
|
THR A:256/Hydrogen |
3.20 |
||
1,3,4,5-tetrahydroxycyclohexanecarboxylic acid |
-6.9 |
ASN A:79/Hydrogen |
3.93 |
PHE A:260/Hydrogen |
5.52 |
||
SER A:248/Hydrogen |
4.56 |
||
THR A:256/Hydrogen THR A:82/Hydrogen |
3.77 3.75 |
||
ASP A:62/Donor Clash |
4.45 |
||
Benzeneacetonitrile,4-hydroxy |
-6.6 |
ARG A:246/Donor Clash |
5.29 |
TRP A:94/Donor Clash |
5.76 |
||
PHE A:93/Hydrophobic |
4.90 |
||
|
|
PHE A:260/Hydrogen |
4.71 |